What is PMFML?

PMFML is an standard defined by the Bundesinstitut für Risikobewertung (BfR) for enconding predictive microbial and Quantitative Microbial Risk Assessment (QMRA) models. PMFML is a plugin of SBML level 3 that extends SBML to support these models.

Dependencies

This project provides a Java implementation of PMFML written on top of JSBML and Combine Archive Toolkit.

JSBML

Open-source and pure Java library for handling SBML files. Developed by Andreas Drager and Nicolas Rodriguez. More information at http://sbml.org/Software/JSBML

Combine Archive Toolkit

Java library to create, read, write and manipulate COMBINE archives. Developed by Martin Scharm. More info at https://sems.uni-rostock.de/projects/combinearchive.

Maven configuration

PMFML may be added as a maven dependency. In order to so the BfR maven repository must be added too.

<repositories>
    <repository>
        <id>bfr-formats</id>
        <url>https://raw.github.com/SiLeBAT/bfr-formats/mvn/repo</url>
        <snapshots>
            <enabled>true</enabled>
            <updatePolicy>always</updatePolicy>
        </snapshots>
    </repository>
</repositories>

<dependency>
    <dependency>
        <groupId>de.bund.bfr</groupId>
        <artifactId>pmfml</artifactId>
        <version>0.0.1-SNAPSHOT</version>
    </dependency>
</dependencies>